Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.010 AlteredExpression disease BEFREE TPT significantly decreased the expression of TNF-α and IL-1β induced by LPS in THP-1 cells. 30691855 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 AlteredExpression disease BEFREE TPT significantly decreased the expression of TNF-α and IL-1β induced by LPS in THP-1 cells. 30691855 2019
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.010 AlteredExpression disease BEFREE Microarray results showed that TPT significantly increased expression of 958 genes and decreased expression of 1400 genes in THP-1 cells upon LPS stimulation. 30691855 2019
Entrez Id: 4982
Gene Symbol: TNFRSF11B
TNFRSF11B
0.010 AlteredExpression disease BEFREE In conclusion, ZLN and TPT treatments are safe on carotid walls in osteoporotic women with subclinical atherosclerosis; circulating OPG and OPN are not affected by long-term anti-osteoporotic treatments and do not correlate with CA-IMT. 30791743 2019
Entrez Id: 7369
Gene Symbol: UMOD
UMOD
0.010 AlteredExpression disease BEFREE Microarray results showed that TPT significantly increased expression of 958 genes and decreased expression of 1400 genes in THP-1 cells upon LPS stimulation. 30691855 2019
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.010 Biomarker disease BEFREE In conclusion, ZLN and TPT treatments are safe on carotid walls in osteoporotic women with subclinical atherosclerosis; circulating OPG and OPN are not affected by long-term anti-osteoporotic treatments and do not correlate with CA-IMT. 30791743 2019
Entrez Id: 64327
Gene Symbol: LMBR1
LMBR1
0.120 AlteredExpression disease BEFREE Triphalangeal thumb‑polysyndactyly syndrome (TPT‑PS) is an autosomal dominant disorder with complete penetrance and a variable expression consisting of opposable triphalangeal thumbs, duplication of the distal thumb phalanx, pre‑axial polydactyly and duplication of the big toes (hallux). 28035386 2017
Entrez Id: 64327
Gene Symbol: LMBR1
LMBR1
0.120 GeneticVariation disease BEFREE Triphalangeal thumbs (TPTs) are regularly caused by mutations in the ZRS in LMBR1. 28889454 2017
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.120 AlteredExpression disease BEFREE Triphalangeal thumb‑polysyndactyly syndrome (TPT‑PS) is an autosomal dominant disorder with complete penetrance and a variable expression consisting of opposable triphalangeal thumbs, duplication of the distal thumb phalanx, pre‑axial polydactyly and duplication of the big toes (hallux). 28035386 2017
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE Triphalangeal thumbs (TPTs) are regularly caused by mutations in the ZRS in LMBR1. 28889454 2017
Entrez Id: 23590
Gene Symbol: PDSS1
PDSS1
0.010 AlteredExpression disease BEFREE Triphalangeal thumb‑polysyndactyly syndrome (TPT‑PS) is an autosomal dominant disorder with complete penetrance and a variable expression consisting of opposable triphalangeal thumbs, duplication of the distal thumb phalanx, pre‑axial polydactyly and duplication of the big toes (hallux). 28035386 2017
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE A Novel ZRS Mutation in a Chinese Patient with Preaxial Polydactyly and Triphalangeal Thumb. 27592358 2016
Entrez Id: 57465
Gene Symbol: TBC1D24
TBC1D24
0.100 CausalMutation disease CLINVAR DOORS syndrome: phenotype, genotype and comparison with Coffin-Siris syndrome. 25169651 2014
Entrez Id: 57465
Gene Symbol: TBC1D24
TBC1D24
0.100 CausalMutation disease CLINVAR The genetic basis of DOORS syndrome: an exome-sequencing study. 24291220 2014
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE Although most mutations cause preaxial polydactyly (PPD), triphalangeal thumb (TPT) or both, a mutation in position 404 of the ZRS causes more severe Werner mesomelic syndrome (WMS) for which malformations include the distal arm or leg bones in addition to the hands and/or feet. 24777739 2014
Entrez Id: 6138
Gene Symbol: RPL15
RPL15
0.400 Biomarker disease GENOMICS_ENGLAND Novel deletion of RPL15 identified by array-comparative genomic hybridization in Diamond-Blackfan anemia. 23812780 2013
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE Point mutations and duplications of the ZRS lead to a variable phenotype of preaxial polydactyly/triphalangeal thumb, tibial hypoplasia, radial ray deficiency, and type IV familial syndactyly (syndactyly of all digits with polydactyly). 23686920 2013
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE A novel ZRS mutation in a Balochi tribal family with triphalangeal thumb, pre-axial polydactyly, post-axial polydactyly, and syndactyly. 22786669 2012
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE A novel 13 base pair insertion in the sonic hedgehog ZRS limb enhancer (ZRS/LMBR1) causes preaxial polydactyly with triphalangeal thumb. 22495965 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.120 GeneticVariation disease BEFREE A locus for triphalangeal thumb, variably associated with pre-axial polydactyly, was previously identified in the zone of polarizing activity regulatory sequence (ZRS), a long range limb-specific enhancer of the Sonic Hedgehog (SHH) gene at human chromosome 7q36.3. 18463159 2008
Entrez Id: 105804841
Gene Symbol: ZRS
ZRS
0.070 GeneticVariation disease BEFREE We found this variant in three independently ascertained probands from southern England with triphalangeal thumb, demonstrated significant linkage of the phenotype to the variant (LOD = 4.1), and identified a shared microsatellite haplotype around the ZRS, suggesting that the probands share a common ancestor. 18463159 2008
Entrez Id: 100049542
Gene Symbol: SHFM3
SHFM3
0.020 GeneticVariation disease BEFREE With respect to gender, 7/12 (58%) of mapped SHFM3 cases with TPT/split foot were male whereas 5/12 (42%) were female, compared with 22/50 (44%) males and 28/50 (56%) females among unmapped cases (P=0.3715). 17120235 2007
Entrez Id: 100049542
Gene Symbol: SHFM3
SHFM3
0.020 GeneticVariation disease BEFREE Preaxial involvement of the upper extremities was most commonly seen at the SHFM3 locus mapped to chromosome 10q24 (OMIM 600095) and consisted of proximally placed thumbs and/or triphalangeal thumbs (TPT), preaxial polydactyly and/or absence of the first ray. 16207208 2005
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.300 Biomarker disease GENOMICS_ENGLAND RNA and protein evidence for haplo-insufficiency in Diamond-Blackfan anaemia patients with RPS19 mutations. 15384984 2004
Entrez Id: 3239
Gene Symbol: HOXD13
HOXD13
0.010 Biomarker disease BEFREE In a previous report, we described the clinical and radiographical features of three related subjects with the disease and suggest that due to the unusual combination of limb defects and to its phenotypic similarity with the limb malformative pattern induced by disrupting the Hoxd13 gene in mouse, the triphalangeal thumb-brachyectrodactyly syndrome might be caused by mutations in a HOX gene. 12382951 2002